Questions to ask the user:
1. "What is your research topic or direction? Please describe the core question or problem you want to investigate."
2. "Which academic domain does your research belong to?"
- STEM (Science, Technology, Engineering, Mathematics)
- Humanities (History, Philosophy, Literature)
- Social Sciences (Sociology, Psychology, Economics)
3. "What language should the proposal be written in?"
- English
- 中文 (Chinese)
4. "Do you have a target word count? (Default: ~3,000 words)"
5. "Are you applying to specific institutions or working with particular faculty?"
6. "Have you uploaded relevant literature to your Zotero library that I should reference?"
阶段 2：文献收集
文献来源策略
┌─────────────────────────────────────────────────────────┐
│ Literature Sources │
├─────────────────────────────────────────────────────────┤
│ General Info → WebSearch (trends, news, reviews) │
│ Open Access → arXiv, PubMed (preprints, OA papers)│
│ Closed Access → Zotero MCP (user's uploaded papers) │
└─────────────────────────────────────────────────────────┘
# Search by topic keywords
Use: mcp__zotero__zotero_search_items
Parameters: query = "{research topic keywords}"
# Advanced search with filters
Use: mcp__zotero__zotero_advanced_search
Parameters: conditions based on author, title, year, tags
# Semantic search for related papers
Use: mcp__zotero__zotero_semantic_search
Parameters: query = "{research question}"
检索论文内容
# Get full text content
Use: mcp__zotero__zotero_get_item_fulltext
Parameters: item_key = "{item key from search}"
# Get user's annotations and highlights
Use: mcp__zotero__zotero_get_annotations
Parameters: item_key = "{item key}"
# Get user's notes
Use: mcp__zotero__zotero_get_notes
Parameters: item_key = "{item key}"
文献组织
将收集到的文献分类整理：
背景/语境 - 奠定该领域基础的开创性论文
当前状态 - 最新进展和前沿技术
研究空白 - 指出局限性或开放问题的论文
方法论 - 包含可采纳/改编的相关方法的论文
相关工作 - 用于比较的相邻研究领域
阶段 3：大纲生成
按领域划分的计划书结构
阅读参考文件以获取特定领域的指导：
references/STRUCTURE_GUIDE.md - 详细的章节指南
references/DOMAIN_TEMPLATES.md - STEM 与人文学科的差异
标准大纲模板
# [Research Title]
## Abstract (150-300 words, 5-10%)
- Research problem summary
- Research questions/objectives
- Methodology overview
- Expected significance
## 1. Introduction (500-800 words, 15-20%)
### 1.1 Background and Context
### 1.2 Problem Statement
### 1.3 Research Questions/Objectives
### 1.4 Scope and Delimitations
## 2. Literature Review (500-1000 words, 20-25%)
### 2.1 Theoretical Framework
### 2.2 Current State of Research
### 2.3 Research Gap Analysis
### 2.4 Positioning of This Study
## 3. Methodology (500-800 words, 20-25%)
### 3.1 Research Design
### 3.2 Data Collection Methods
### 3.3 Data Analysis Approach
### 3.4 Validity and Limitations
## 4. Timeline (200-300 words, 5-10%)
### 4.1 Research Phases
### 4.2 Key Milestones
### 4.3 Gantt Chart (optional)
## 5. Significance and Expected Contributions (200-400 words, 10-15%)
### 5.1 Theoretical Contributions
### 5.2 Practical Implications
### 5.3 Broader Impact
## References (minimum 40 references)
注意：不要包含附录部分。所有必要内容都应整合到正文中。
用户确认
关键步骤：将大纲呈现给用户，并在继续内容生成之前等待确认。
Present the generated outline and ask:
"Here is the proposed outline for your research proposal:
[Display outline with section titles and estimated word counts]
Please review and let me know:
1. Is the overall structure acceptable?
2. Would you like to add, remove, or modify any sections?
3. Should any section receive more/less emphasis?
I will proceed with content generation once you approve the outline."
The contributions include:
- Novel segmentation algorithm
- Multi-modal fusion framework
- Clinical validation study
✓ 良好（基于散文）：
This research is expected to advance the field through several interconnected
contributions. First, the development of a novel segmentation algorithm will
enable automated plaque detection with accuracy surpassing current methods.
Building on this foundation, a multi-modal fusion framework will integrate
complementary imaging data to capture plaque characteristics inaccessible to
any single modality. Finally, rigorous clinical validation will establish
the prognostic value of these computational biomarkers for predicting
cardiovascular events.
3. 模糊化语言（学术谨慎性）
避免
改用
"will prove"
"aims to demonstrate"
"definitely"
"likely", "potentially"
"is obvious"
"evidence suggests"
"proves"
"indicates", "demonstrates"
句子模板
引入背景：
* "Over the past decade, [X] has emerged as a critical area of..."
* "Recent advances in [X] have opened new possibilities for..."
识别空白：
* "However, [X] remains poorly understood."
* "Despite these advances, significant challenges persist in..."
* "A critical gap exists in our understanding of..."
陈述目标：
* "This research aims to address [X] by..."
* "The primary objective of this study is to..."
* "This proposal seeks to investigate..."
方法论论证：
* "Building on previous work, this study proposes to..."
* "This approach was selected because..."
* "[Method] offers several advantages for studying [X]..."
预期贡献：
* "This work has the potential to advance..."
* "The findings may contribute to..."
* "This research could provide insights into..."
5. 过渡与连接词
* 补充：Moreover, Furthermore, In addition, Additionally
* 对比：However, Nevertheless, Conversely, On the other hand
* 因果：Therefore, Consequently, As a result, Thus
* 强调：Importantly, Notably, Of particular significance
* 顺序：First, Subsequently, Finally, Following this
> **[Figure 1 Suggestion]** *Title: Overview of the proposed research framework*
> Content: A flowchart or schematic diagram illustrating the three-phase research
> design, showing data flow from imaging modalities through AI processing to
> clinical outcomes. Include icons for CCTA/IVUS/OCT inputs, deep learning
> modules, and output predictions.
> Recommended style: Clean vector graphics with consistent color scheme.
# Convert to Word document
pandoc proposal.md -o proposal.docx
# Convert to PDF (requires LaTeX)
pandoc proposal.md -o proposal.pdf
# Convert to PDF with custom styling
pandoc proposal.md -o proposal.pdf --template=academic.latex
